BIOQUANT

Reviews

R36. Weinmann R, Frank L, Rippe K (2023) Approaches to characterize chromatin subcompartment organization in the cell nucleus. Curr Opin Struct Biol 83, 102695. doi: 10.1016/j.sbi.2023.102695 | Abstract | Reprint | Article metrics

R35. Sant P, Rippe K, Mallm JP (2023) Approaches for single-cell RNA sequencing across tissues and cell types. Transcription, published online 16 April 2023. doi: 10.1080/21541264.2023.2200721 | Abstract | Reprint | Article metrics

R34. Trojanowski J, Rippe K (2022) Transcription factor binding and activity on chromatin. Curr Opin Syst Biol 31, 100438. doi: 10.1016/j.coisb.2022.100438 | Abstract | Reprint | Article metrics

R33. Rippe K, Papantonis A (2022) Functional organization of RNA polymerase II in nuclear subcompartments Curr Opin Cell Biol 74, 88-96. doi: 10.1016/j.ceb.2022.01.005 | Abstract | Reprint | Article metrics

R32. Gunkel M, Eberle JP, Bulkescher R, Reymann J, Chung I, Simon R, Sauter G, Starkuviene V, Rippe K, Erfle H (2022) Multiscale Fluorescent Imaging. In Single-Molecule Science - From Super-Resolution Microscopy to DNA Mapping and Diagnostics, Appasani K, Appasani RK (eds), pp 38-48. Cambridge: Cambridge University Press. doi: 10.1017/9781108525909.006 | Abstract | Reprint | Article metrics

R31. Rippe K (2022) Liquid-liquid phase separation in chromatin. Cold Spring Harb Perspect Biol 14, a040683. doi: 10.1101/cshperspect.a040683 | Abstract | Reprint | Article metrics

R30. Rippe K, Papantonis A (2021) RNA polymerase II transcription compartments: from multivalent chromatin binding to liquid droplet formation? Nat Rev Mol Cell Biol 22, 645-646. doi: 10.1038/s41580-021-00401-6 | Abstract | Reprint | Article metrics

R29. Narlikar GJ, Myong S, Larson D, Maeshima K, Francis N, Rippe K, Sabari B, Strader L, Tjian R (2021) Is transcriptional regulation just going through a phase? Mol Cell 81, 1579-1585. doi: 10.1016/j.molcel.2021.03.046 | Abstract | Reprint | Article metrics

R28. Frank L, Rippe K (2020) Repetitive RNAs as regulators of chromatin-associated subcompartment formation by phase separation. J Mol Biol 432, 4270-4286. doi: 10.1016/j.jmb.2020.04.015 | Abstract | Reprint (1.2 MB) | Article metrics

R27. Erdel F & Rippe K (2018). Formation of chromatin subcompartments by phase separation. Biophys J 114, 2262-2270. doi: 10.1016/j.bpj.2018.03.011 | Abstract | Reprint (0.5 MB) | Article metrics.

R26. Rippe K & Luke B (2015). TERRA and the state of the telomere. Nat Struct Mol Biol 22, 853-858. doi: 10.1038/nsmb.3078 | Abstract | Reprint (1.0 MB) | Article metrics

R25. Cremer T, Cremer M, Hübner B, Strickfaden H, Smeets D, Popken J, Sterr M, Markaki Y, Rippe K & Cremer C (2015). The 4D nucleome: evidence for spatially co-aligned active and inactive nuclear compartments and their functional implications. FEBS Lett 589, 2931-2943. doi: 10.1016/j.febslet.2015.05.037 | Abstract | Reprint (2.2 MB) | Article metrics

R24. Walker, S. I., Callahan, B. J., Bhattacharya, T., Caporale, L. H., Grigoryev, S., Rippe, K. & Pellegrini, M. (2013). Evolutionary dynamics and information hierarchies in biological systems. Ann. N. Y. Acad. Sci. 1305, 1-17. doi: 10.1111/nyas.12140 | Abstract | Reprint (0.3 MB).

R23. Chung, I., Osterwald, S., Deeg, K. & Rippe, K. (2012). PML body meets telomere: The beginning of an ALTernate ending. Nucleus 3, 263-275. doi: 10.4161/nucl.20326 | Abstract | Reprint (2.3 MB)

R22. Caudron-Herger, M. & Rippe, K. (2012). Nuclear architecture by RNA. Curr. Opin. Genet. Dev. 22, 187-197. doi: 10.1016/j.gde.2011.12.005 | Abstract | Reprint (1.9 MB)

R21. Rippe, K., Stehr, R., Wedemann, G. (2012). Monte Carlo simulations of nucleosome chains to identify factors that control DNA compaction and access. In Innovations in Biomolecular Modeling and Simulation, Schlick, T., ed., pp. 198-235, RSC Publishing, Cambridge. doi: 10.1039/9781849735056-00198 | Abstract | Reprint (1.6 Mb)

R20. Rippe, K. (2012). The folding of the nucleosome chain. In Genome organization and function in the cell nucleus, Rippe, K., ed., pp. 139-167, Wiley-VCH, Weinheim. Abstract | Reprint (0.4 Mb)

R19. Längst, G., Teif, V. B. & Rippe, K. (2012). Chromatin remodeling and nucleosome positioning. In Genome organization and function in the cell nucleus, Rippe, K., ed., pp. 111-138, Wiley-VCH, Weinheim. Abstract | Reprint (3.7 Mb)

R18. Strickfaden, H., Cremer, T. & Rippe, K. (2012). Higher order chromatin organization and dynamics. In Genome organization and function in the cell nucleus, Rippe, K., ed., pp. 417-447, Wiley-VCH, Weinheim. Abstract | Reprint (1.7 Mb)

R17. Erdel, F. & Rippe, K. (2011). Chromatin remodeling by ISWI type complexes in mammalian cells – where, when and why? FEBS J. 278, 3608-3618. doi: 10.1111/j.1742-4658.2011.08282.x | Abstract | Reprint (0.3 Mb)

R16. Erdel, F., Krug, J., Längst, G. & Rippe, K. (2011). Targeting chromatin remodelers: signals and search mechanisms, Biochim. Biophys. Acta 1809, 497-508, doi: 10.1016/j.bbagrm.2011.06.005 | Abstract | Reprint

R15. Erdel, F., Müller-Ott, K. P., Baum, M., Wachsmuth, M. & Rippe, K. (2011). Dissecting chromatin interactions in living cells from protein mobility maps. Chromosome Res. 19, 99-115. doi: 10.1007/s10577-010-9155-6 | Abstract | Reprint (0.6 MB)

R14. Teif, V. B. & Rippe, K. (2010). Statistical mechanical lattice models for protein-DNA binding in chromatin. J. Phys. Condens. Matter 22, 414105. Abstract | Reprint (1.4 MB pdf file)

R13. Wachsmuth, M., Caudron-Herger, M. & Rippe, K. (2008). Genome organization: balancing stability and plasticity. Biochim. Biophys. Acta 1783, 2061-2079. Abstract | Reprint (1.8 MB pdf file).

R12. Rippe, K., Mazurkiewicz, J. & Kepper, N. (2008). Interactions of histones with DNA: nucleosome assembly, stability and dynamics. In DNA interactions with polymers and surfactants, Dias, R. S. & Lindman, B., eds., pp. 135-172. Wiley, London, ISBN: 978-0-8138-0646-4. Abstract | Reprint

R11. Rippe, K. (2007). Dynamic organization of the cell nucleus. Curr. Opin. Gen. Dev. 17, 373-380. Abstract | Reprint (0.6 MB pdf file)

R10. Kenzelmann, M., Rippe, K. & Mattick, J. S. (2006). RNA: Networks & Imaging. Mol. Sys. Biol. 2, 44. Abstract | Reprint (0.2 MB pdf file)

R9. Görisch, S. M., Lichter, P. & Rippe, K. (2005). Mobility of multi-subunit complexes in the nucleus: chromatin dynamics and accessibility of nuclear subcompartments. Histochem. Cell Biol. 123, 217-228. Abstract | Reprint (0.7 MB pdf file)

R8. Rippe, K. (2001). Making contacts on a nucleic acid polymer. Trends Biochem. Sci. 26, 733-740. Abstract | Reprint (0.8 MB pdf file)

R7. Langowski, J., Wachsmuth, M., Rippe, K. & Tewes, M. (2000). Biomolecular shape and interactions determined by fluorescence correlation spectroscopy. In Energies et forces de l'interaction entre macromolécules biologiques: l'aspect quantitatif, Frénoy, J.-P., ed., Vol. 2, pp. 65-77. Publications CNRS, Paris. Reprint (1.0 MB pdf file)

R6. Bantscheff, M., Perraud, A.-L., Bock, A., Rippe, K., Weiss, V., Glocker, M. & Gross, R. (2000). Structure - function - relationships in the Bvg and Evg two-component phosphorelay systems. Int. J. Med. Microbiol. 290, 317-323. Abstract

R5. von Hippel, P. H., Rees, W. A., Rippe, K. & Wilson, K. S. (1996). Specificity mechanisms in the control of transcription. Biophys. Chem. 59, 231-246. Abstract | Reprint (1.5 MB pdf file)

R4. Rippe, K., von Hippel, P. H. & Langowski, J. (1995). Action at a distance: DNA-looping and initiation of transcription. Trends Biochem. Sci. 20, 500-506. Abstract | Reprint (0.8 MB pdf file)

R3. Rippe, K., Westhof, E., Kuryavyi, V. V. & Jovin, T. M. (1992). Polymorphism and possible biological functions of parallel-stranded DNA. In Structural tools for the analysis of protein-nucleic acid complexes, Lilley, D. M. J., Heumann, H. & Suck, D., eds., pp. 81-107. Birkhäuser Verlag, Basel. Reprint (8.2 MB pdf file)

R2. Rippe, K. & Jovin, T. M. (1992). Parallel-stranded duplex DNA. Meth. Enzymol. 211, 199-220. Abstract | Reprint (7.9 MB pdf file)

R1. Jovin, T. M., Rippe, K., Ramsing, N. B., Klement, R., Elhorst, W. & Voijtiskova, M. (1990). Parallel stranded DNA. In Structure & Methods, DNA & RNA, Sarma, R. H. & Sarma, M. H., eds., vol. 3, pp. 155-174. Adenine Press, Schenectady, New York. Reprint (8.2 MB pdf file)

Contact: E-Mail