BioQuant > Research Groups > Chromatin Networks > Publications

Publications

2025

Rippe K, Papantonis A (2025) Transcription compartments – from factories to condensates. Nat Rev Genet, accepted for publication. Abstract | Reprint | Article metrics

Rademacher A, Huseynov A, Bortolomeazzi M, Wille SJ, Schumacher S, Sant P, Keitel D, Okonechnikov K, Ghasemi D, Pajtler K, Mallm J-P, Rippe K (2025) Comparison of spatial transcriptomics technologies used for tumor cryosections. Genome Biol, accepted in principle. Preprint: bioRxiv, 2024.2004.2003.586404. doi: 10.1101/2024.04.03.586404 | Abstract | Reprint | Article metrics

Okonechnikov K, Joshi P, Koerber V, Rademacher A, Bortolomeazzi M, Mallm J-P, da Silva PBG, Statz B, Sepp M, Sarropoulos I, Yamada-Saito T, Vaillant J, Wittmann A, Schramm K, Blattner-Johnson M, Fiesel P, Jones B, Milde T, Pajtler K, van Tilburg CM, Witt O, Bochennek K, Weber KJ, Nonnenmacher L, Reimann C, Schueller U, Mynarek M, Rutkowski S, Jones DTW, Korshunov A, Rippe K, Westermann F, Thongjuea S, Hoefer T, Kaessmann H, Kutscher LM, Pfister SM (2025) Medulloblastoma oncogene aberrations are not involved in tumor initiation, but essential for disease progression and therapy resistance. Nature, published online 7 May 2025. doi: 10.1038/s41586-025-08973-5 | Abstract | Reprint | Article metrics | Press release

Seufert I, Vargas C, Wille SJ, Rippe K (2025) Deregulated enhancer-promoter communication in cancer through altered nuclear architecture. Int J Cancer, published online 12 April 2025. doi: 10.1002/ijc.35424 | Abstract | Reprint | Article metrics

Lutz R, Poos AM, Sole-Boldo L, John L, Wagner J, Prokoph N, Baertsch MA, Vonficht D, Palit S, Brobeil A, Mechtersheimer G, Hildenbrand N, Hemmer S, Steiger S, Horn S, Pepke W, Spranz DM, Rehnitz C, Sant P, Mallm JP, Friedrich MJ, Reichert P, Huhn S, Trumpp A, Rippe K, Haghverdi L, Frohling S, Muller-Tidow C, Hubschmann D, Goldschmidt H, Willimsky G, Sauer S, Raab MS, Haas S, Weinhold N (2025) Bone marrow breakout lesions act as key sites for tumor-immune cell diversification in multiple myeloma. Sci Immunol 10, eadp6667 doi: 10.1126/sciimmunol.adp6667 | Abstract | Reprint | Article metrics | Press release

Preprints

Seufert I, Gerosa I, Varamogianni-Mamatsi V, Vladimirova A, Sen E, Mantz S, Rademacher A, Schumacher S, Liakopoulos P, Kolovos P, Anders S, Mallm J-P, Papantonis A, Rippe K (2024) Two distinct chromatin modules regulate proinflammatory gene expression. bioRxiv, 2024.2008.2003.606159. doi: 10.1101/2024.08.03.606159 | Abstract | Reprint | Article metrics

Joshi P, Stelzer T, Okonechnikov K, Sarropoulos I, Sepp M, Pour-Jamnani MV, Rademacher A, Yamada-Saito T, Schneider C, Schmidt J, Schäfer P, Leiss K, Bortolomeazzi M, Mallm J-P, da Silva PBG, Statz B, Wittmann A, Schramm K, Blattner-Johnson M, Fiesel P, Jones B, Milde T, Pajtler K, van Tilburg CM, Witt O, Rippe K, Korshunov A, Jones DTW, Hovestadt V, Northcott PA, Thongjuea S, Jäger N, Kaessmann H, Pfister SM, Kutscher LM (2024) Gene regulatory network landscape of Group 3/4 medulloblastoma. bioRxiv,2024.2002.2009.579680. doi: 10.1101/2024.02.09.579680 | Abstract | Reprint | Article metrics

Weinmann R, Udupa A, Nickels JF, Frank L, Knotz C, Rippe K (2024) HP1 binding creates a local barrier against transcription activation and persists during chromatin decondensation. bioRiv, 2024.2012.2009.627308. doi: 2024.2012.2009.627308 | Abstract | Reprint | Article metrics

Selected recent publications 2019-2023 (more selected publications)

Piroeva KV, McDonald C, Xanthopoulos C, Fox C, Clarkson CT, Mallm J-P, Vainshtein Y, Ruje L, Klett LC, Stilgenbauer S, Mertens D, Kostareli E*, Rippe K*, Teif VB* (2023) Nucleosome repositioning in chronic lymphocytic leukaemia. Genome Res 33, 1649-1661. *corresponding authors. doi: 10.1101/gr.277298.122 | Abstract | Reprint | Article metrics

Poos AM, Prokoph N, Przybilla MJ, Mallm J-P, Steiger S, Seufert I, John L, Tirier SM, Bauer K, Baumann A, Munawar U, Rasche L, Kortuem M, Giesen N, Huhn S, Reichert P, Mueller-Tidow C, Goldschmidt H, Stegle O, Raab MS, Rippe K*, Weinhold N* (2023) Resolving therapy resistance mechanisms in multiple myeloma by multiomics subclone analysis. Blood 142, 1633-1646. *corresponding authors. doi: 10.1182/blood.2023019758 | Abstract | Reprint | Article metrics | Press release (German)

Trojanowski J, Frank L, Rademacher A, Mücke N, Grigaitis P, Rippe K (2022) Transcription activation is enhanced by multivalent interactions independent of phase separation. Mol Cell 82, 1878-1893. doi: 10.1016/j.molcel.2022.04.017 | Abstract | Reprint | Article metrics

Frank L, Rademacher A, Mücke N, Tirier SM, Koeleman E, Knotz C, Schumacher S, Stainczyk SA, Westermann F, Fröhling S, Chudasama P, Rippe K (2022) ALT-FISH quantifies alternative lengthening of telomeres activity by imaging of single-stranded repeats. Nucleic Acids Res 50, e61. doi: 10.1093/nar/gkac113 | Abstract | Reprint | Article metrics

Tirier SM, Mallm J-P, Steiger S, Poos AM, Awwad M, Giesen N, Casiraghi N, Susak H, Bauer K, Baumann A, John L, Seckinger A, Hose D, Müller-Tidow C, Goldschmidt H, Stegle O, Hundemer M, Weinhold N, Raab MS, Rippe K (2021) Subclone specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single cell transcriptomics. Nat Commun 12, 6960. doi: 10.1038/s41467-021-26951-z | Abstract | Reprint | Article metrics

Erdel F, Rademacher A, Vlijm R, Tünnermann J, Schweigert E, Frank L, Yserantant K, Hummert J, Bauer C, Schumacher S, Weinmann R, Alwash AA, Normand C, Herten D-P, Engelhardt J, Rippe K (2020) Mouse heterochromatin adopts digital compaction states without showing hallmarks of HP1-driven liquid-liquid phase separation. Mol Cell 78, 236-249.e7. doi: 10.1016/j.molcel.2020.02.005 | Abstract | Reprint | Article metrics | Comment

Mallm JP, Windisch P, Biran A, Schumacher S, Glass R, Herold-Mende C, Meshorer E, Barbus M, Rippe K (2020) Glioblastoma initiating cells are sensitive to histone demethylase inhibition due to loss of DNA repair capacity. Intl J Cancer 146, 1281-1292. doi: 10.1002/ijc.32649 | Abstract | Reprint | Article metrics

Mallm JP, Iskar M, Ishaque N, Klett LC, Kugler SJ, Muino JM, Teif VB, Poos AM, Großmann S, Erdel F, Tavernari D, Koser SD, Schumacher S, Brors B, König R, Remondini D, Vingron M, Stilgenbauer S, Lichter P, Zapatka M, Mertens D & Rippe K (2019) Linking aberrant chromatin features in chronic lymphocytic leukemia to deregulated transcription factor networks. Mol Syst Biol 15, e8339. doi: 10.15252/msb.20188339 | Abstract | Reprint | Appendix | Additional data | Article metrics

All publications 1989-2024

All publications Karsten Rippe, h-index 78 (Google Scholar)

Publications and bibliometric data of Karsten Rippe from databases

Yearly citation numbers of Karsten Rippe from 2008 to 2022 from Google Scholar.

Total number citations: 18065

h-index: 71

i10 index: 162