BIOQUANT > Research Groups > Chromatin Networks > Publications

Publications

2021

Bulkescher R, Chung I, Eberle JP, Erfle H, Gunkel M, Reymann J, Rippe K, Sauter G, Simon R, Starkuviene V (2021) Multiscale Fluorescent Imaging. In Single-Molecule Science - From Super-Resolution Microscopy to DNA Mapping and Diagnostics, Appasani K, Appasani RK (eds). Cambridge: Cambridge University Press, in press. doi: 10.1017/9781108525909

Frank L, Weinmann R, Erdel F, Trojanowski J, Rippe K (2021) Transcriptional activation of heterochromatin by recruitment of dCas9 activators. In Enhancers and Promoters: Methods and Protocols, Methods in Molecular Biology, Borggrefe T, Daniele Giaimo B (eds), in press.

Hartlieb SA, Sieverling L, Nadler-Holly M, Ziehm M, Toprak UH, Herrmann C, Ishaque N, Okonechnikov K, Gartlgruber M, Park Y-G, Wecht EM, Savelyeva L, Henrich K-O, Rosswog C, Fischer M, Hero B, Jones DTW, Pfaff E, Witt O, Pfister SM, Volckmann R, Koster J, Kiesel K, Rippe K, Taschner-Mandl S, Ambros P, Brors B, Selbach M, Feuerbach L, Westermann F (2021) Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome. Nat Commun, in press.

2020

Thorn GJ, Clarkson CT, Rademacher A, Mamayusupova H, Schotta G, Rippe K, Teif VB (2020) DNA sequence-dependent formation of heterochromatin nanodomains. bioRxiv 230433. doi: 10.1101/2020.12.20.423673 | Preprint (6 MB) | Article metrics

Bogeska R, Kaschutnig P, Fawaz M, Mikecin AM, Buechler-Schaff M, Paffenholz S, Asada N, Frauhammer F, Buettner F, Ball M, Knoch J, Staeble S, Walter D, Petri A, Correno-Gonzalez M, Wagner V, Brors B, Haas S, Lipka DB, Essers MAG, Holland-Letz T, Mallm JP, Rippe K, Frenette PS, Rieger MA, Milsom MD (2020) Hematopoietic stem cells fail to regenerate following inflammatory challenge. bioRxiv 230433. doi: 10.1101/2020.08.01.230433 | Preprint (7 MB) | Article metrics

Roider T, Seufert J, Uvarovskii A, Frauhammer F, Bordas M, Abedpour N, Stolarczyk M, Mallm, JP, Herbst S, Bruch P, Balke-Want H, Hundemer M, Rippe K, Goeppert B, Seiffert M, Brors B, Mechtersheimer G, Zenz T, Peifer M, Chapuy B, Schlesner M, Müller-Tidow C, Fröhling S, Huber W, Anders S, Dietrich S (2020). Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels. Nat Cell Biol 22, 896-906. doi: 10.1038/s41556-020-0532-x | Abstract | Reprint (19.9 MB) | Article metrics

Rademacher A, Erdel F, Trojanowski J, Rippe K (2020) Tracing reversible light-induced chromatin binding with near-infrared fluorescent proteins. Meth Mol Biol 2173, 171-188. doi: 10.1007/978-1-0716-0755-8_12 | Abstract | Reprint (0.8 MB) | Article metrics

Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes M, Lyko F (2020). Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming. Commun Biol 3, 188. doi: 10.1038/s42003-020-0922-4 | Abstract | Reprint (11.9 MB) | Article metrics

Frank L, Rippe K (2020) Repetitive RNAs as regulators of chromatin-associated subcompartment formation by phase separation. J Mol Biol 432, 4270-4286. doi: 10.1016/j.jmb.2020.04.015 | Abstract | Reprint (1.2 MB) | Article metrics

Wierzbinska JA, Toth R, Ishaque N, Rippe K, Mallm JP, Klett LC, Mertens D, Zenz T, Hielscher T, Seifert M, Küppers R, Assenov Y, Lutsik P, Stilgenbauer S, Roessner PM, Seiffert M, Byrd J, Oakes CC, Plass C, Lipka DB (2020) Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL. Genome Med 12, 29. doi: 10.1186/s13073-020-00724-7 | Abstract | Reprint (5.0 MB) | Article metrics

Erdel F, Rademacher A, Vlijm R, Tünnermann J, Schweigert E, Frank L, Yserantant K, Hummert J, Bauer C, Schumacher S, Weinmann R, Alwash AA, Normand C, Herten D-P, Engelhardt J, Rippe K (2020) Mouse heterochromatin adopts digital compaction states without showing hallmarks of HP1-driven liquid-liquid phase separation. Mol Cell 78, 236-249.e7. doi: 10.1016/j.molcel.2020.02.005 | Abstract | Reprint (6.2 MB) | Article metrics | Comment

Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortes-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, PCAWG-Structural Variation Working Group, Brors B, Rippe K, Jones DTW, Feuerbach L, PCAWG Consortium (2020) Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun 11, 733. doi: 10.1038/s41467-019-13824-9 | Abstract | Reprint (2.2 MB) | Article metrics

ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (2020) Pan-cancer analysis of whole genomes. Nature 578, 82-93. doi: 10.1038/s41586-020-1969-6 | Abstract | Reprint (23.6 MB) | Article metrics

Mallm JP, Windisch P, Biran A, Schumacher S, Glass R, Herold-Mende C, Meshorer E, Barbus M, Rippe K (2020) Glioblastoma initiating cells are sensitive to histone demethylase inhibition due to loss of DNA repair capacity. Intl J Cancer 146, 1281-1292. doi: 10.1002/ijc.32649 | Abstract | Reprint (6.6 MB) | Article metrics

Hoflmayer D, Steinhoff A, Hube-Magg C, Kluth M, Simon R, Burandt E, Tsourlakis MC, Minner S, Sauter G, Buscheck F, Wilczak W, Steurer S, Huland H, Graefen M, Haese A, Heinzer H, Schlomm T, Jacobsen F, Hinsch A, Poos AM, Oswald M, Rippe K, Konig R, Schroeder C (2020) Expression of CCCTC-binding factor (CTCF) is linked to poor prognosis in prostate cancer. Mol Oncol14, 129-138. doi: 10.1002/1878-0261.12597 | Abstract | Reprint (10.5 MB) | Article metrics

Abstracts

Tirier SM, Mallm J-P, Casiraghi N, Susak H, Giesen N, Poos A, Bauer K, Baumann A, John L, Xu J, Klett L, Müller-Tidow C, Brors B, Goldschmidt H, Weinhold N, Stegle O, Rippe K, Raab MS (2019) Dissecting heterogeneity of tumor cells and their microenvironment in refractory multiple myeloma. Blood 134, 571. doi: 10.1182/blood-2019-128625 | Abstract

Poos AM, Mallm J-P, Tirier SM, Casiraghi N, Susak H, Giesen N, Bauer K, Baumann A, John L, Lander I, Xu J, Przybilla M, Kunze A, Mueller-Tidow C, Brors B, Stegle O, Goldschmidt H, Rippe K, Raab MS, Weinhold N (2019) A comprehensive analysis of intra-tumor heterogeneity and treatment responses in relapsed/refractory multiple myeloma patients using single cell sequencing approaches. Blood 134, 575. doi: 10.1182/blood-2019-130051 | Abstract

Staeble S, Kraemer S, Langstein J, Bogeska R, Hartmann M, Schoenung M, Czeh M, Knoch J, Anstee N, Haas S, Mahmoud A, Graesel J, Huebschmann D, Feuerbach L, Dieter W, Brors B, Rippe K, Mallm J-P, Rosenbauer F, Plass C, Schlesner M, Milsom MD, Lipka DB (2019) Deconvolution of Hematopoietic Commitment Decisions By Genome-Wide Analysis of Progressive DNA Methylation Changes. Blood 134, 1179. doi: 10.1182/blood-2019-124429 | Abstract

Selected recent publications 2014-2020 (more selected publications)

Mallm JP, Iskar M, Ishaque N, Klett LC, Kugler SJ, Muino JM, Teif VB, Poos AM, Großmann S, Erdel F, Tavernari D, Koser SD, Schumacher S, Brors B, König R, Remondini D, Vingron M, Stilgenbauer S, Lichter P, Zapatka M, Mertens D & Rippe K (2019) Linking aberrant chromatin features in chronic lymphocytic leukemia to deregulated transcription factor networks. Mol Syst Biol 15, e8339. doi: 10.15252/msb.20188339 | Abstract | Reprint (7.1 MB) | Appendix (6.8 MB) | Additional data | Article metrics

Rademacher A, Erdel F, Trojanowski J, Schumacher S & Rippe K (2017). Real-time observation of light-controlled transcription in living cells. J Cell Sci 130, 4213-4224. doi: 10.1242/jcs.205534 | Abstract | Reprint (12.9 MB) | JCS First person | Article metrics

Wachsmuth M, Knoch TA & Rippe K (2016). Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells. Epigenetics Chromatin 9, 57. doi: 10.1186/s13072-016-0093-1 | Abstract | Reprint (5.1 MB) | Article metrics.

Caudron-Herger M, Pankert T, Seiler J, Nemeth A, Voit R, Grummt I & Rippe K (2015). Alu element-containing RNAs maintain nucleolar structure and function. EMBO J 34, 2758-2771. doi: 10.15252/embj.201591458 | Abstract | Reprint (4.6 MB) | Comment | Cover | Article metrics

Mallm JP & Rippe K (2015). Aurora kinase B regulates telomerase activity via a centromeric RNA in stem cells. Cell Rep 11, 1667-1678. doi: 10.1016/j.celrep.2015.05.015 | Abstract | Reprint (5.9 MB) | Article metrics

Osterwald S, Deeg KI, Chung I, Parisotto D, Wörz S, Rohr K, Erfle H & Rippe K (2015). PML induces compaction, partial TRF2 depletion and DNA damage signaling at telomeres and promotes alternative lengthening of telomeres. J Cell Sci 128, 1887-1900. doi: 10.1242/jcs.148296 | Abstract | Reprint (4.3 MB) | Article metrics

Müller-Ott K, Erdel F, Matveeva A, Hahn M, Mallm, JP, Rademacher A, Marth C, Zhang Q, Kaltofen S, Schotta G, Höfer T & Rippe K (2014). Specificity, propagation and memory of pericentric heterochromatin. Mol Syst Biol 10, 746. doi: 10.15252/msb.20145377 | Abstract | Reprint (7.4 MB) | Article metrics

Baum M, Wachsmuth M, Erdel F & Rippe K (2014). Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells. Nat Commun 5, 4494. doi: 10.1038/ncomms5494 | Abstract | Reprint (6.4 MB) | Article metrics

Teif VB, Beshnova DA, Vainshtein Y, Marth C, Mallm JP, Höfer T & Rippe K (2014). Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Res 24, 1285-1295. doi: 10.1101/gr.164418.113 | Abstract | Reprint (3.3 MB) | Article metrics

All publications 1989-2020

All publications h-index Karsten Rippe: 60 (Google Scholar)

Publications and bibliometric data of Karsten Rippe from databases

Yearly citation numbers of Karsten Rippe from 2006 to 2020. Total number of citations: 10978, h-index: 55, i10 index: 127. Bibliometric data are taken from Google Scholar.

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