BIOQUANT > Research Groups > Chromatin Networks > Publications

Publications

2021

Hanna BS, Llao-Cid L, Iskar M, Roessner PM, Klett LC, Wong JKL, Paul Y, Ioannou N, Öztürk S, Mack N, Kalter V, Colomer D, Campo E, Bloehdorn J, Stilgenbauer S, Dietrich S, Schmidt M, Gabriel R, Rippe K, Feuerer M, Ramsay A, Zapatka M, Lichter P, Seiffert M (2021) IL-10 receptor signaling protects CD8+ T-cells from activation-induced exhaustion and prevents tumor immune escape. Immunity, accepted.

Rademacher A, Weinmann R, Erdel F, Rippe K (2021) Assessing the phase separation propensity of proteins in living cells through optodroplet formation. Meth Mol Biol, accepted.

Thorn GJ, Clarkson CT, Rademacher A, Mamayusupova H, Schotta G, Rippe K, Teif VB. DNA sequence-dependent formation of heterochromatin nanodomains, Nat Commun, accepted. Preprint: bioRxiv 230433. doi: 10.1101/2020.12.20.423673 | Preprint (6 MB) | Article metrics

Tirier SM, Mallm J-P, Steiger S, Poos AM, Awwad M, Giesen N, Casiraghi N, Susak H, Bauer K, Baumann A, John L, Seckinger A, Hose D, Müller-Tidow C, Goldschmidt H, Stegle O, Hundemer M, Weinhold N, Raab MS, Rippe K. Subclone specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single cell transcriptomics. Nat Commun 12, 6960. doi: 10.1038/s41467-021-26951-z | Abstract | Reprint | Article metrics

Berlin C, Cottard F, Willmann D, Urban S, Tirier SM, Marx L, Rippe K, Schmitt M, Petrocelli V, Greten FR, Fichtner-Feigl S, Kesselring R, Metzger E, Schüle R. KMT9 controls stemness and growth of colorectal cancer. Cancer Res, published online 4 November 2021. doi: 10.1158/0008-5472.CAN-21-1261 | Abstract | Reprint | Article metrics

Faure-Dupuy S, Riedl T, Rolland M, Hizir Z, Reisinger F, Neuhaus K, Schuehle S, Remouchamps C, Gillet N, Schönung M, Stadler M, Wettengel J, Barnault R, Parent R, Schuster LC, Farhat R, Prokosch S, Leuchtenberger C, Öllinger R, Engleitner T, Rippe K, Rad R, Unger K, Tscharahganeh D, Lipka DB, Protzer U, Durantel D, Lucifora J, Dejardin E, Heikenwalder M (2021) Control of APOBEC3B induction and cccDNA decay by NF-κB and miR-138-5p. JHEP Reports 3, 100354. doi: 10.1016/j.jhepr.2021.100354 | Abstract | Reprint | Article metrics

Rippe K, Papantonis A (2021) RNA polymerase II transcription compartments: from multivalent chromatin binding to liquid droplet formation? Nat Rev Mol Cell Biol 22, 645-646. doi: 10.1038/s41580-021-00401-6 | Abstract | Reprint | Article metrics

Mallm J-P, Bundschuh C, Kim H, Weidner N, Steiger S, Lander I, Börner K, Bauer K, Hübschmann D, Benes V, Rausch T, Trevisan Doimo de Azevedo N, Telzerow A, Jost KL, Parthé S, Schnitzler P, Boutros M, Müller B, Bartenschlager R, Kräusslich H-G, Rippe K (2021) Local emergence and decline of a SARS-CoV-2 variant with mutations L452R and N501Y in the spike protein. medRxiv 2021.04.27.21254849. doi: 10.1101/2021.04.27.21254849 | Preprint | Article metrics

Trojanowski J, Frank L, Rademacher A, Grigaitis P, Rippe K (2021) Transcription activation is enhanced by multivalent interactions independent of phase separation. bioRxiv 2021.01.27.428421. doi: 10.1101/2021.01.27.428421 | Preprint | Article metrics

Frank L, Weinmann R, Erdel F, Trojanowski J, Rippe K (2021) Transcriptional activation of heterochromatin by recruitment of dCas9 activators. Meth Mol Biol 2351, 307-320. doi: 10.1007/978-1-0716-1597-3_17 | Abstract | Reprint | Article metrics

Rippe K (2021) Liquid-liquid phase separation in chromatin. Cold Spring Harb Perspect Biol, published online 14 June 2021. doi: 10.1101/cshperspect.a040683 | Abstract | Accepted manuscript (0.7 MB) | Article metrics | Reprint download (limited to 50 copies)

Narlikar GJ, Myong S, Larson D, Maeshima K, Francis N, Rippe K, Sabari B, Strader L, Tjian R (2021) Is transcriptional regulation just going through a phase? Mol Cell 81, 1579-1585. doi: 10.1016/j.molcel.2021.03.046 | Abstract | Reprint | Article metrics

Hartlieb SA, Sieverling L, Nadler-Holly M, Ziehm M, Toprak UH, Herrmann C, Ishaque N, Okonechnikov K, Gartlgruber M, Park YG, Wecht EM, Savelyeva L, Henrich KO, Rosswog C, Fischer M, Hero B, Jones DTW, Pfaff E, Witt O, Pfister SM, Volckmann R, Koster J, Kiesel K, Rippe K, Taschner-Mandl S, Ambros P, Brors B, Selbach M, Feuerbach L, Westermann F (2021) Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome. Nat Commun 12, 1269. doi: 10.1038/s41467-021-21247-8 | Abstract | Reprint | Article metrics

Bogeska R, Kaschutnig P, Fawaz M, Mikecin AM, Buechler-Schaff M, Paffenholz S, Asada N, Frauhammer F, Buettner F, Ball M, Knoch J, Staeble S, Walter D, Petri A, Correno-Gonzalez M, Wagner V, Brors B, Haas S, Lipka DB, Essers MAG, Holland-Letz T, Mallm JP, Rippe K, Frenette PS, Rieger MA, Milsom MD (2020) Hematopoietic stem cells fail to regenerate following inflammatory challenge. bioRxiv 230433. doi: 10.1101/2020.08.01.230433 | Preprint | Article metrics

Selected recent publications 2015-2020 (more selected publications)

Erdel F, Rademacher A, Vlijm R, Tünnermann J, Schweigert E, Frank L, Yserantant K, Hummert J, Bauer C, Schumacher S, Weinmann R, Alwash AA, Normand C, Herten D-P, Engelhardt J, Rippe K (2020) Mouse heterochromatin adopts digital compaction states without showing hallmarks of HP1-driven liquid-liquid phase separation. Mol Cell 78, 236-249.e7. doi: 10.1016/j.molcel.2020.02.005 | Abstract | Reprint | Article metrics | Comment

Mallm JP, Windisch P, Biran A, Schumacher S, Glass R, Herold-Mende C, Meshorer E, Barbus M, Rippe K (2020) Glioblastoma initiating cells are sensitive to histone demethylase inhibition due to loss of DNA repair capacity. Intl J Cancer 146, 1281-1292. doi: 10.1002/ijc.32649 | Abstract | Reprint | Article metrics

Mallm JP, Iskar M, Ishaque N, Klett LC, Kugler SJ, Muino JM, Teif VB, Poos AM, Großmann S, Erdel F, Tavernari D, Koser SD, Schumacher S, Brors B, König R, Remondini D, Vingron M, Stilgenbauer S, Lichter P, Zapatka M, Mertens D & Rippe K (2019) Linking aberrant chromatin features in chronic lymphocytic leukemia to deregulated transcription factor networks. Mol Syst Biol 15, e8339. doi: 10.15252/msb.20188339 | Abstract | Reprint | Appendix | Additional data | Article metrics

Rademacher A, Erdel F, Trojanowski J, Schumacher S & Rippe K (2017). Real-time observation of light-controlled transcription in living cells. J Cell Sci 130, 4213-4224. doi: 10.1242/jcs.205534 | Abstract | Reprint | JCS First person | Article metrics

Wachsmuth M, Knoch TA & Rippe K (2016). Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells. Epigenetics Chromatin 9, 57. doi: 10.1186/s13072-016-0093-1 | Abstract | Reprint | Article metrics.

Caudron-Herger M, Pankert T, Seiler J, Nemeth A, Voit R, Grummt I & Rippe K (2015). Alu element-containing RNAs maintain nucleolar structure and function. EMBO J 34, 2758-2771. doi: 10.15252/embj.201591458 | Abstract | Reprint | Comment | Cover | Article metrics

Mallm JP & Rippe K (2015). Aurora kinase B regulates telomerase activity via a centromeric RNA in stem cells. Cell Rep 11, 1667-1678. doi: 10.1016/j.celrep.2015.05.015 | Abstract | Reprint | Article metrics

Osterwald S, Deeg KI, Chung I, Parisotto D, Wörz S, Rohr K, Erfle H & Rippe K (2015). PML induces compaction, partial TRF2 depletion and DNA damage signaling at telomeres and promotes alternative lengthening of telomeres. J Cell Sci 128, 1887-1900. doi: 10.1242/jcs.148296 | Abstract | Reprint | Article metrics

All publications 1989-2020

All publications h-index Karsten Rippe: 64 (Google Scholar)

Publications and bibliometric data of Karsten Rippe from databases

Yearly citation numbers of Karsten Rippe from 2006 to 2020. Total number of citations: 10978, h-index: 55, i10 index: 127. Bibliometric data are taken from Google Scholar.

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