BIOQUANT

Publications

Publications 2018

Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortes-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, Rippe K, Jones DTW, Brors B & Feuerbach L (2018). Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun, in press. Preprint: biorxiv 157560. doi: 10.1101/157560

Gao Q, Eck S, Matthias J, Chung I, Engelhardt J, Rippe K & Rohr K (2018) Bayesian joint super-resolution, deconvolution, and denoising of images with Poisson-Gaussian noise. 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), 938-942. doi: 10.1109/ISBI.2018.8363725 | Abstract | Reprint (0.4 MB)

Baltissen D, Wollmann T, Gunkel M, Chung I, Erfle H, Rippe K & Rohr K (2018) Comparison of segmentation methods for tissue microscopy images of glioblastoma cells. 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), 396-399. doi: 10.1109/ISBI.2018.8363601 | Abstract | Reprint (0.4 MB)

Braun DM, Chung I, Kepper N & Rippe K (2018). TelNet - a database for human and yeast genes involved in telomere maintenance. BMC Genet 19, 32. doi: 10.1186/s12863-018-0617-8 | Abstract | Reprint (2.4 MB) | Article metrics.

Zirkel A, Nikolic M, Sofiadis K, Mallm JP, Brackley CA, Gothe H, Drechsel O, Becker C, Altmuelle J, Josipovic N, Georgomanolis T, Brant L, Franzen J, Koker M, Gusmao EG, Costa IG, Ullrich RT, Wagner W, Roukos V, Nuernberg P, Marenduzzo D, Rippe K & Papantonis A (2018). HMGB2 loss upon senescenceentry disrupts genomic organization and induces CTCF clustering across cell types. Mol Cell 70, 730-744. doi: 10.1016/j.molcel.2018.03.030 | Abstract | Reprint (7.7 MB) | Article metrics.

Erdel F & Rippe K (2018). Formation of chromatin subcompartments by phase separation. Biophys J 114, 2262-2270. doi: 10.1016/j.bpj.2018.03.011 | Abstract | Reprint (0.5 MB) | Article metrics.

Wollmann T, Ivanova J, Gunkel M, Chung I, Erfle H, Rippe K & Rohr K (2018). Multi-channel deep transfer learning for nuclei segmentation in glioblastoma cell tissue images. In Bildverarbeitung für die Medizin 2018, Springer Berlin Heidelberg, 316-321. doi: 10.1007/978-3-662-56537-7_83 | Abstract | Reprint (0.6 MB)

Chudasama P, Mughal S, Sanders M, Hübschmann D, Chung I, Deeg KI, Wong SH, Rabe S, Hlevnjak M, Zapatka M, Ernst A, Kleinheinz K, Schlesner M, Sieverling L, Klink B, Schröck E, Hoogenboezem R, Kasper B, Heilig C, Egerer G, Wolf S, von Kalle C, Eils R, Stenzinger A, Weichert W, Glimm H, Gröschel S, Kopp H-G, Omlor G, Lehner B, Bauer S, Schimmack S, Ulrich A, Mechtersheimer G, Rippe K, Brors B, Hutter B, Renner M, Hohenberger P, Scholl C & Fröhling S (2018). Integrative genomic and transcriptomic analysis of leiomyosarcoma. Nat Commun 9, 144. doi: 10.1038/s41467-017-02602-0 | Abstract | Reprint (3.1 MB) | Article metrics

Current preprints

Tirier SM, Park J, Preusser F, Amrhein L, Gu Z, Steiger S, Mallm JP, Waschow M, Eismann B, Gut M, Gut IG, Rippe K, Schlesner M, Theis F, Fuchs C, Ball CR, Glimm H, Eils R & Conrad C (2018) Pheno-seq - linking 3D phenotypes of clonal tumor spheroids to gene expression. biorxiv 311472. doi: 10.1101/311472

Deeg KI, Chung I, Poos AM, Braun DM, Korshunov A, Oswald M, Kepper, N, Bender S, Castel D, Lichter P, Grill J, Pfister SM, König R, Jones DT & Rippe K (2017). Dissecting telomere maintenance mechanisms in pediatric glioblastoma. biorxiv 129106. doi: 10.1101/129106

Feuerbach L, Sieverling L Deeg, KI, Ginsbach P, Hutter B, Buchhalter I, Northcott PA, Lichter P, Pfister SM, Jones DT, Rippe K & Brors, B (2016). TelomereHunter: telomere content estimation and characterization from whole genome sequencing data. bioRxiv 065532. doi: 10.1101/065532

Selected recent publications 2012-2017 (more selected publications)

Rademacher A, Erdel F, Trojanowski J, Schumacher S & Rippe K (2017). Real-time observation of light-controlled transcription in living cells. J Cell Sci 130, 4213-4224. doi: 10.1242/jcs.205534 | Abstract | Reprint (12.9 MB) | JCS First person | Article metrics

Wachsmuth M, Knoch TA & Rippe K (2016). Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells. Epigenetics Chromatin 9, 57. doi: 10.1186/s13072-016-0093-1 | Abstract | Reprint (5.1 MB) | Article metrics.

Caudron-Herger M, Pankert T, Seiler J, Nemeth A, Voit R, Grummt I & Rippe K (2015). Alu element-containing RNAs maintain nucleolar structure and function. EMBO J 34, 2758-2771. doi: 10.15252/embj.201591458 | Abstract | Reprint (4.6 MB) | Comment | Cover | Article metrics

Mallm JP & Rippe K (2015). Aurora kinase B regulates telomerase activity via a centromeric RNA in stem cells. Cell Rep 11, 1667-1678. doi: 10.1016/j.celrep.2015.05.015 | Abstract | Reprint (5.9 MB) | Article metrics

Osterwald S, Deeg KI, Chung I, Parisotto D, Wörz S, Rohr K, Erfle H & Rippe K (2015). PML induces compaction, partial TRF2 depletion and DNA damage signaling at telomeres and promotes alternative lengthening of telomeres. J Cell Sci 128, 1887-1900. doi: 10.1242/jcs.148296 | Abstract | Reprint (4.3 MB) | Article metrics

Müller-Ott K, Erdel F, Matveeva A, Hahn M, Mallm, JP, Rademacher A, Marth C, Zhang Q, Kaltofen S, Schotta G, Höfer T & Rippe K (2014). Specificity, propagation and memory of pericentric heterochromatin. Mol Syst Biol 10, 746. doi: 10.15252/msb.20145377 | Abstract | Reprint (7.4 MB) | Article metrics

Baum M, Wachsmuth M, Erdel F & Rippe K (2014). Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells. Nat Commun 5, 4494. doi: 10.1038/ncomms5494 | Abstract | Reprint (6.4 MB) | Article metrics

Teif VB, Beshnova DA, Vainshtein Y, Marth C, Mallm JP, Höfer T & Rippe K (2014). Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Res 24, 1285-1295. doi: 10.1101/gr.164418.113 | Abstract | Reprint (3.3 MB) | Article metrics

Erdel F & Rippe K (2012). Quantifying transient binding of ISWI chromatin remodelers in living cells by pixel-wise photobleaching profile evolution analysis. Proc Natl Acad Sci USA 109, E3221-E3230. doi: 10.1073/pnas.1209579109 | Abstract | Reprint (3.4 MB) | Article metrics

Teif VB, Vainshtein Y, Caudron-Herger M, Mallm JP, Marth C, Höfer T & Rippe K (2012). Genome-wide nucleosome positioning during embryonic stem cell development. Nat Struct Mol Biol 19, 1185-1191. doi: 10.1038/nsmb.2419 | Abstract | Reprint (7.4 MB) | Article metrics

All publications 1989-2017

All publications h-index Karsten Rippe: 51 (Google Scholar), 44 (Researcher ID)

Publications and bibliometric data of Karsten Rippe from databases

Yearly citation numbers from 2003 to 2017. Total number of citations: 8475, h-index: 50, i10 index: 109. Bibliometric data are taken from Google Scholar.

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