BIOQUANT

Publications

Current publications

Cremer, T., Cremer, M., Hübner, B., Strickfaden, H., Smeets, D., Popken, J., Sterr, M., Markaki, Y., Rippe, K. & Cremer, C.(2015). The 4D nucleome: evidence for spatially co-aligned active and inactive nuclear compartments and their functional implications. FEBS Lett., accepted for publication.

Mallm, J.-P. & Rippe, K. (2015). Aurora kinase B regulates telomerase activity via a centromeric RNA in stem cells. Cell Rep. 11, published online 4 June 2015. doi: 10.1016/j.celrep.2015.05.015 | Abstract | Reprint (4.5 MB)

Osterwald, S., Deeg, K. I., Chung, I., Parisotto, D., Wörz, S., Rohr, K., Erfle, H. & Rippe, K. (2015). PML induces compaction, partial TRF2 depletion and DNA damage signaling at telomeres and promotes alternative lengthening of telomeres. J. Cell Sci. 128, 1887-1900. doi: 10.1242/jcs.148296 | Abstract | Reprint (4.3 MB)

Caudron-Herger, M., Cook, P. R., Rippe, K. & Papantonis, A. (2015). Dissecting the nascent human transcriptome by analyzing the RNA content of transcription factories. Nucleic Acids Res., published online 20 April 2015. doi: 10.1093/nar/gkv390 | Abstract | Reprint (5.3 MB)

Yearim, A., Gelfman, S., Shayevitch, R., Melcer, S., Glaich, O., Mallm, J.-P., Nissim-Rafinia, M., Cohen, A.-H.S., Rippe, K., Meshorer, E. & Ast, G. (2015). HP1 is involved in regulating the global impact of DNA methylation on alternative splicing. Cell Rep. 10, 1122-1134. doi: 10.1016/j.celrep.2015.01.038 | Abstract | Reprint (6.1 MB)

Teif, V. B., Kepper, N., Yserentant, K., Wedemann, G. & Rippe, K. (2015). Affinity, stoichiometry and cooperativity of heterochromatin protein 1 (HP1) binding to nucleosomal arrays. J. Phys. Condens. Matter 27, 064110. doi: 10.1088/0953-8984/27/6/064110 | Abstract | Reprint (1.5 MB)

Erdel, F., Baum, M. & Rippe, K. (2015). The viscoelastic properties of chromatin and the nucleoplasm revealed by scale-dependent protein mobility. J. Phys. Condens. Matter 27, 064115. doi: 10.1088/0953-8984/27/6/064115 | Abstract | Reprint (1.1 MB)

Bhattacharya, N., Reichenzeller, M., Caudron-Herger, M., Haebe, S., Brady, N., Diener, S., Nothing, M., Döhner, H., Stilgenbauer, S., Rippe, K. & Mertens, D. (2015). Loss of cooperativity of secreted CD40L and increased dose-response to IL4 on CLL cell viability correlates with enhanced activation of NF-kB and STAT6. Int. J. Cancer 136, 65-73. doi: 10.1002/ijc.28974 | Abstract | Reprint (3.0 MB)

Selected publications since 2010 (more selected publications)

Müller-Ott, K., Erdel, F., Matveeva, A., Hahn, M., Mallm, J.-P., Rademacher, A., Marth, C., Zhang, Q., Kaltofen, S., Schotta, G., Höfer, T. & Rippe, K. (2014). Specificity, propagation and memory of pericentric heterochromatin. Mol. Syst. Biol. 10, 746. doi: 10.15252/msb.20145377 | Abstract | Reprint (7.4 MB)

Baum, M., Wachsmuth, M., Erdel, F. & Rippe, K. (2014). Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells. Nat. Commun. 5, 4494. doi: 10.1038/ncomms5494 | Abstract | Reprint (6.4 MB)

Teif, V. B., Beshnova, D. A., Vainshtein, Y., Marth, C., Mallm, J.-P., Höfer, T. & Rippe, K. (2014). Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Res. 24, 1285-1295. doi: 10.1101/gr.164418.113 | Abstract | Reprint (3.3 MB)

Erdel, F. & Rippe, K. (2012). Quantifying transient binding of ISWI chromatin remodelers in living cells by pixel-wise photobleaching profile evolution analysis. Proc. Natl. Acad. Sci. USA 109, E3221-E3230. doi: 10.1073/pnas.1209579109 | Abstract | Reprint (3.4 MB)

Teif, V. B., Vainshtein, Y., Caudron-Herger, M., Mallm, J.-P., Marth, C., Höfer, T. & Rippe, K. (2012). Genome-wide nucleosome positioning during embryonic stem cell development. Nat. Struct. Mol. Biol. 19, 1185-1191. doi: 10.1038/nsmb.2419 | Abstract | Reprint (7.4 MB)

Rippe, K., ed. (2012). Genome organization and function in the cell nucleus, 594 pages, Wiley-VCH, Weinheim. ISBN: 3527326987. Abstract | Comment 1 | Comment 2

Caudron-Herger, M. & Rippe, K. (2012). Nuclear architecture by RNA. Curr. Opin. Genet. Dev. 22, 187-197. doi: 10.1016/j.gde.2011.12.005 | Abstract | Reprint (1.9 MB)

Chung, I., Leonhardt, H. & Rippe, K. (2011). De novo assembly of a PML nuclear subcompartment occurs through multiple pathways and induces telomere elongation. J. Cell Sci. 124, 3603-3618. doi: 10.1242/jcs.084681 | Abstract | Reprint (9.4 MB) | Comment

Ettig, R., Kepper, N., Stehr, R., Wedemann, G. & Rippe, K. (2011). Dissecting DNA-histone interactions by molecular dynamics simulations of unwrapping DNA from the nucleosome. Biophys. J. 101, 1999-2008. doi: 10.1016/j.bpj.2011.07.057 | Abstract | Reprint (5.8 MB)

Erdel, F., Schubert, T., Marth, C., Längst, G. & Rippe, K. (2010). Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites. Proc. Natl. Acad. Sci. USA 107, 19873-19878. Abstract | Reprint (1.4 MB) | Commtent 1 | Comment 2

All publications 1989-2013

All publications h-index Karsten Rippe: 36 (Researcher ID), 41 (Google Scholar)

Publication list of Karsten Rippe from databases

 

 

Contact: E-Mail
to top of page