BIOQUANT

Publications

Current publications

Mattout, A., Aaronson, Y., Sailaja, B. S., Ram, E. V. R., Harikumar, A., Mallm, J.-P., Sim, K. H., Nissim-Rafinia, M., Supper, E., Singh, P., Kwan, S. S., Gasser, S. M., Rippe, K. & Meshorer, E. (2015). Heterochromatin Protein 1β (HP1β) has distinct functions and distinct nuclear distribution in pluripotent versus differentiated cells. Genome Biol., in press.

Rippe, K. & Luke, B. (2015). TERRA and the state of the telomere. Nat. Struct. Mol. Biol., in press.

Junge, K. M., Bauer, T., Geissler, S., Hirche, F., Thürmann, L., Bauer, M., Trump, S., Bieg, M., Weichenhan, D., Malm, J.-P., Ishaque, N., Mücke, O., Röder, S., Herberth, G., Diez, U., Borte, M., Rippe, K., Plass, C., Hermann, C., Stangl, G., Eils, R. & Lehmann, I. (2015). Increased vitamin D levels at birth and in early infancy increase offspring allergy risk — evidence for involvement of epigenetic mechanisms, J. Allergy Clin. Immunol., published online 15 August 2015. doi: 10.1016/j.jaci.2015.06.040 | Abstract | Reprint (20.9 MB)

Mallm, J.-P. & Rippe, K. (2015). Aurora kinase B regulates telomerase activity via a centromeric RNA in stem cells. Cell Rep. 11, 1667-1678. doi: 10.1016/j.celrep.2015.05.015 | Abstract | Reprint (5.9 MB)

Cremer, T., Cremer, M., Hübner, B., Strickfaden, H., Smeets, D., Popken, J., Sterr, M., Markaki, Y., Rippe, K. & Cremer, C.(2015). The 4D nucleome: evidence for spatially co-aligned active and inactive nuclear compartments and their functional implications. FEBS Lett., published online 28 May 2015. doi: 10.1016/j.febslet.2015.05.037 | Abstract | Reprint (2.2 MB)

Osterwald, S., Deeg, K. I., Chung, I., Parisotto, D., Wörz, S., Rohr, K., Erfle, H. & Rippe, K. (2015). PML induces compaction, partial TRF2 depletion and DNA damage signaling at telomeres and promotes alternative lengthening of telomeres. J. Cell Sci. 128, 1887-1900. doi: 10.1242/jcs.148296 | Abstract | Reprint (4.3 MB)

Caudron-Herger, M., Cook, P. R., Rippe, K. & Papantonis, A. (2015). Dissecting the nascent human transcriptome by analyzing the RNA content of transcription factories. Nucleic Acids Res. 43, e95. doi: 10.1093/nar/gkv390 | Abstract | Reprint (5.3 MB)

Yearim, A., Gelfman, S., Shayevitch, R., Melcer, S., Glaich, O., Mallm, J.-P., Nissim-Rafinia, M., Cohen, A.-H.S., Rippe, K., Meshorer, E. & Ast, G. (2015). HP1 is involved in regulating the global impact of DNA methylation on alternative splicing. Cell Rep. 10, 1122-1134. doi: 10.1016/j.celrep.2015.01.038 | Abstract | Reprint (6.1 MB)

Teif, V. B., Kepper, N., Yserentant, K., Wedemann, G. & Rippe, K. (2015). Affinity, stoichiometry and cooperativity of heterochromatin protein 1 (HP1) binding to nucleosomal arrays. J. Phys. Condens. Matter 27, 064110. doi: 10.1088/0953-8984/27/6/064110 | Abstract | Reprint (1.5 MB)

Erdel, F., Baum, M. & Rippe, K. (2015). The viscoelastic properties of chromatin and the nucleoplasm revealed by scale-dependent protein mobility. J. Phys. Condens. Matter 27, 064115. doi: 10.1088/0953-8984/27/6/064115 | Abstract | Reprint (1.1 MB)

Bhattacharya, N., Reichenzeller, M., Caudron-Herger, M., Haebe, S., Brady, N., Diener, S., Nothing, M., Döhner, H., Stilgenbauer, S., Rippe, K. & Mertens, D. (2015). Loss of cooperativity of secreted CD40L and increased dose-response to IL4 on CLL cell viability correlates with enhanced activation of NF-kB and STAT6. Int. J. Cancer 136, 65-73. doi: 10.1002/ijc.28974 | Abstract | Reprint (3.0 MB)

Selected publications since 2010 (more selected publications)

Müller-Ott, K., Erdel, F., Matveeva, A., Hahn, M., Mallm, J.-P., Rademacher, A., Marth, C., Zhang, Q., Kaltofen, S., Schotta, G., Höfer, T. & Rippe, K. (2014). Specificity, propagation and memory of pericentric heterochromatin. Mol. Syst. Biol. 10, 746. doi: 10.15252/msb.20145377 | Abstract | Reprint (7.4 MB)

Baum, M., Wachsmuth, M., Erdel, F. & Rippe, K. (2014). Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells. Nat. Commun. 5, 4494. doi: 10.1038/ncomms5494 | Abstract | Reprint (6.4 MB)

Teif, V. B., Beshnova, D. A., Vainshtein, Y., Marth, C., Mallm, J.-P., Höfer, T. & Rippe, K. (2014). Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Res. 24, 1285-1295. doi: 10.1101/gr.164418.113 | Abstract | Reprint (3.3 MB)

Erdel, F. & Rippe, K. (2012). Quantifying transient binding of ISWI chromatin remodelers in living cells by pixel-wise photobleaching profile evolution analysis. Proc. Natl. Acad. Sci. USA 109, E3221-E3230. doi: 10.1073/pnas.1209579109 | Abstract | Reprint (3.4 MB)

Teif, V. B., Vainshtein, Y., Caudron-Herger, M., Mallm, J.-P., Marth, C., Höfer, T. & Rippe, K. (2012). Genome-wide nucleosome positioning during embryonic stem cell development. Nat. Struct. Mol. Biol. 19, 1185-1191. doi: 10.1038/nsmb.2419 | Abstract | Reprint (7.4 MB)

Rippe, K., ed. (2012). Genome organization and function in the cell nucleus, 594 pages, Wiley-VCH, Weinheim. ISBN: 3527326987. Abstract | Comment 1 | Comment 2

Caudron-Herger, M. & Rippe, K. (2012). Nuclear architecture by RNA. Curr. Opin. Genet. Dev. 22, 187-197. doi: 10.1016/j.gde.2011.12.005 | Abstract | Reprint (1.9 MB)

Chung, I., Leonhardt, H. & Rippe, K. (2011). De novo assembly of a PML nuclear subcompartment occurs through multiple pathways and induces telomere elongation. J. Cell Sci. 124, 3603-3618. doi: 10.1242/jcs.084681 | Abstract | Reprint (9.4 MB) | Comment

Ettig, R., Kepper, N., Stehr, R., Wedemann, G. & Rippe, K. (2011). Dissecting DNA-histone interactions by molecular dynamics simulations of unwrapping DNA from the nucleosome. Biophys. J. 101, 1999-2008. doi: 10.1016/j.bpj.2011.07.057 | Abstract | Reprint (5.8 MB)

Erdel, F., Schubert, T., Marth, C., Längst, G. & Rippe, K. (2010). Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites. Proc. Natl. Acad. Sci. USA 107, 19873-19878. Abstract | Reprint (1.4 MB) | Commtent 1 | Comment 2

All publications 1989-2013

All publications h-index Karsten Rippe: 36 (Researcher ID), 41 (Google Scholar)

Publication list of Karsten Rippe from databases

 

 

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