BIOQUANT

Publications

Publications 2020

Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes M, Lyko F (2020). Single-cell transcriptomes of the aging human skin reveal loss of fibroblast priming. Commun Biol, accepted. bioRxiv 633131. doi: 10.1101/633131

Rademacher A, Erdel F Trojanowski J, Rippe K (2020) Tracing reversible light-induced chromatin binding with near-infrared fluorescent proteins. In Photoswitching Proteins: Methods and Protocols, Methods in Molecular Biology, D Niopek, ed., Springer Nature, New York, in press.

Wierzbinska JA, Toth R, Ishaque N, Rippe K, Mallm JP, Klett LC, Mertens D, Zenz T, Hielscher T, Seifert M, Küppers R, Assenov Y, Lutsik P, Stilgenbauer S, Roessner PM, Seiffert M, Byrd J, Oakes CC, Plass C, Lipka DB (2020) Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL. Genome Med 12, 29. doi: 10.1186/s13073-020-00724-7 | Abstract | Reprint (5.0 MB) | Article metrics

Erdel F, Rademacher A, Vlijm R, Tünnermann J, Schweigert E, Frank L, Yserantant K, Hummert J, Bauer C, Schumacher S, Weinmann R, Alwash AA, Normand C, Herten D-P, Engelhardt J, Rippe K (2020) Mouse heterochromatin adopts digital compaction states without showing hallmarks of HP1-driven liquid-liquid phase separation. Mol Cell, published online 25 February 2020. doi: 10.1016/j.molcel.2020.02.005 | Abstract | Reprint (6.2 MB) | Article metrics

Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortes-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, PCAWG-Structural Variation Working Group, Brors B, Rippe K, Jones DTW, Feuerbach L, PCAWG Consortium (2020) Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun 11, 733. doi: 10.1038/s41467-019-13824-9 | Abstract | Reprint (2.2 MB) | Article metrics

ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (2020) Pan-cancer analysis of whole genomes. Nature 578, 82-93. doi: 10.1038/s41586-020-1969-6 | Abstract | Reprint (23.6 MB) | Article metrics

Mallm JP, Windisch P, Biran A, Schumacher S, Glass R, Herold-Mende C, Meshorer E, Barbus M, Rippe K (2020) Glioblastoma initiating cells are sensitive to histone demethylase inhibition due to loss of DNA repair capacity. Intl J Cancer 146, 1281-1292. doi: 10.1002/ijc.32649 | Abstract | Reprint (6.6 MB) | Article metrics

Hoflmayer D, Steinhoff A, Hube-Magg C, Kluth M, Simon R, Burandt E, Tsourlakis MC, Minner S, Sauter G, Buscheck F, Wilczak W, Steurer S, Huland H, Graefen M, Haese A, Heinzer H, Schlomm T, Jacobsen F, Hinsch A, Poos AM, Oswald M, Rippe K, Konig R, Schroeder C (2020) Expression of CCCTC-binding factor (CTCF) is linked to poor prognosis in prostate cancer. Mol Oncol14, 129-138. doi: 10.1002/1878-0261.12597 | Abstract | Reprint (10.5 MB) | Article metrics

Preprints and abstracts

Roider T, Seufert J, Uvarovskii A, Frauhammer F, Bordas M, Abedpour N, Stolarczyk M, Mallm J-P, Rabe S, Bruch P-M, Balke-Want H, Hundemer M, Rippe K, Goeppert B, Seiffert M, Brors B, Mechtersheimer G, Zenz T, Peifer M, Chapuy B, Schlesner M, Müller-Tidow C, Fröhling S, Huber W, Anders S, Dietrich S (2019) Dissecting intratumor heterogeneity of nodal B cell lymphomas on the transcriptional, genetic, and drug response level. biorxiv 850438. doi: 10.1101/850438

Tirier SM, Mallm J-P, Casiraghi N, Susak H, Giesen N, Poos A, Bauer K, Baumann A, John L, Xu J, Klett L, Müller-Tidow C, Brors B, Goldschmidt H, Weinhold N, Stegle O, Rippe K, Raab MS (2019) Dissecting heterogeneity of tumor cells and their microenvironment in refractory multiple myeloma. Blood 134, 571. doi: 10.1182/blood-2019-128625 | Abstract

Poos AM, Mallm J-P, Tirier SM, Casiraghi N, Susak H, Giesen N, Bauer K, Baumann A, John L, Lander I, Xu J, Przybilla M, Kunze A, Mueller-Tidow C, Brors B, Stegle O, Goldschmidt H, Rippe K, Raab MS, Weinhold N (2019) A comprehensive analysis of intra-tumor heterogeneity and treatment responses in relapsed/refractory multiple myeloma patients using single cell sequencing approaches. Blood 134, 575. doi: 10.1182/blood-2019-130051 | Abstract

Staeble S, Kraemer S, Langstein J, Bogeska R, Hartmann M, Schoenung M, Czeh M, Knoch J, Anstee N, Haas S, Mahmoud A, Graesel J, Huebschmann D, Feuerbach L, Dieter W, Brors B, Rippe K, Mallm J-P, Rosenbauer F, Plass C, Schlesner M, Milsom MD, Lipka DB (2019) Deconvolution of Hematopoietic Commitment Decisions By Genome-Wide Analysis of Progressive DNA Methylation Changes. Blood 134, 1179. doi: 10.1182/blood-2019-124429 | Abstract

Bogeska R, Kaschutnig P, Paffenholz SV, Knoch J, Mallm J-P, Fawaz M, Buettner F, Walter D, Frauhammer F, Holland-Letz T, Asada N, Mikecin Drazic A-M, Buechler-Schaff M, Correno-Gonzalez M, Ball M, Staeble S, Gräsel J, Haas S, Lipka DB, Rippe K, Brors B, Frenette PS, Rieger MA, Essers MAG, Milsom MD (2019) No Evidence for Hematopoietic Stem Cell Self-Renewal in-Vivo Following Inflammatory Challenge. Blood 134, 456. doi: 10.1182/blood-2019-125744 | Abstract

Deeg KI, Chung I, Poos AM, Braun DM, Korshunov A, Oswald M, Kepper, N, Bender S, Castel D, Lichter P, Grill J, Pfister SM, König R, Jones DT, Rippe K (2017). Dissecting telomere maintenance mechanisms in pediatric glioblastoma. bioRxiv 129106. doi: 10.1101/129106

Selected recent publications 2014-2019 (more selected publications)

Mallm JP, Iskar M, Ishaque N, Klett LC, Kugler SJ, Muino JM, Teif VB, Poos AM, Großmann S, Erdel F, Tavernari D, Koser SD, Schumacher S, Brors B, König R, Remondini D, Vingron M, Stilgenbauer S, Lichter P, Zapatka M, Mertens D & Rippe K (2019) Linking aberrant chromatin features in chronic lymphocytic leukemia to deregulated transcription factor networks. Mol Syst Biol 15, e8339. doi: 10.15252/msb.20188339 | Abstract | Reprint (7.1 MB) | Appendix (6.8 MB) | Additional data | Article metrics

Rademacher A, Erdel F, Trojanowski J, Schumacher S & Rippe K (2017). Real-time observation of light-controlled transcription in living cells. J Cell Sci 130, 4213-4224. doi: 10.1242/jcs.205534 | Abstract | Reprint (12.9 MB) | JCS First person | Article metrics

Wachsmuth M, Knoch TA & Rippe K (2016). Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells. Epigenetics Chromatin 9, 57. doi: 10.1186/s13072-016-0093-1 | Abstract | Reprint (5.1 MB) | Article metrics.

Caudron-Herger M, Pankert T, Seiler J, Nemeth A, Voit R, Grummt I & Rippe K (2015). Alu element-containing RNAs maintain nucleolar structure and function. EMBO J 34, 2758-2771. doi: 10.15252/embj.201591458 | Abstract | Reprint (4.6 MB) | Comment | Cover | Article metrics

Mallm JP & Rippe K (2015). Aurora kinase B regulates telomerase activity via a centromeric RNA in stem cells. Cell Rep 11, 1667-1678. doi: 10.1016/j.celrep.2015.05.015 | Abstract | Reprint (5.9 MB) | Article metrics

Osterwald S, Deeg KI, Chung I, Parisotto D, Wörz S, Rohr K, Erfle H & Rippe K (2015). PML induces compaction, partial TRF2 depletion and DNA damage signaling at telomeres and promotes alternative lengthening of telomeres. J Cell Sci 128, 1887-1900. doi: 10.1242/jcs.148296 | Abstract | Reprint (4.3 MB) | Article metrics

Müller-Ott K, Erdel F, Matveeva A, Hahn M, Mallm, JP, Rademacher A, Marth C, Zhang Q, Kaltofen S, Schotta G, Höfer T & Rippe K (2014). Specificity, propagation and memory of pericentric heterochromatin. Mol Syst Biol 10, 746. doi: 10.15252/msb.20145377 | Abstract | Reprint (7.4 MB) | Article metrics

Baum M, Wachsmuth M, Erdel F & Rippe K (2014). Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells. Nat Commun 5, 4494. doi: 10.1038/ncomms5494 | Abstract | Reprint (6.4 MB) | Article metrics

Teif VB, Beshnova DA, Vainshtein Y, Marth C, Mallm JP, Höfer T & Rippe K (2014). Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development. Genome Res 24, 1285-1295. doi: 10.1101/gr.164418.113 | Abstract | Reprint (3.3 MB) | Article metrics

All publications 1989-2019

All publications h-index Karsten Rippe: 55 (Google Scholar), 47 (Researcher ID)

Publications and bibliometric data of Karsten Rippe from databases

Yearly citation numbers of Karsten Rippe from 2005 to 2019. Total number of citations: 10978, h-index: 55, i10 index: 127. Bibliometric data are taken from Google Scholar.

 

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