BioQuant > Research Groups > Chromatin Networks > Publications

Publications

2023

Seufert I, Sant P, Bauer K, Syed AP, Rippe K, Mallm JP (2023) Enhancing sensitivity and versatility of Tn5 based single cell omics, bioRxiv: doi: 10.1101/2023.07.13.548833 | Abstract | Reprint | Article metrics

Ghasemi DR, Okonechnikov K, Rademacher A, Tirier S, Maass KK, Schumacher H, Sundheimer J, Statz B, Rifaioglu AS, Bauer K, Schumacher S, Bortolomeazzi M, Giangaspero F, Ernst KJ, Saez-Rodriguez J, Jones DTW, Kawauchi D, Mallm JP, Rippe K, Korshunov A, Pfister SM, Pajtler KW (2023) Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage. bioRxiv: doi 10.1101/2022.09.02.506321 | Reprint | Article metrics

Piroeva KV, McDonald C, Xanthopoulos C, Fox C, Clarkson CT, Mallm J-P, Vainshtein Y, Ruje L, Klett LC, Stilgenbauer S, Mertens D, Kostareli E*, Rippe K*, Teif VB* (2023) Nucleosome repositioning in chronic lymphocytic leukaemia. Genome Res, in press. *corresponding authors. bioRxiv: doi: 10.1101/2022.12.20.518743 | Preprint | Article metrics

Weinmann R, Frank L, Rippe K (2023) Approaches to characterize chromatin subcompartment organization in the cell nucleus. Curr Opin Struct Biol, in press. doi: 10.1016/j.sbi.2023.102695 | Abstract | Reprint | Article metrics

John L, Poos AM, Brobeil A, Schinke C, Huhn S, Prokoph N, Lutz R, Wagner B, Zangari M, Tirier SM, Mallm JP, Schumacher S, Vonficht D, Sole-Boldo L, Quick S, Steiger S, Przybilla MJ, Bauer K, Baumann A, Hemmer S, Rehnitz C, Luckerath C, Sachpekidis C, Mechtersheimer G, Haberkorn U, Dimitrakopoulou-Strauss A, Reichert P, Barlogie B, Muller-Tidow C, Goldschmidt H, Hillengass J, Rasche L, Haas SF, van Rhee F, Rippe K, Raab MS, Sauer S, Weinhold N (2023) Resolving the spatial architecture of myeloma and its microenvironment at the single-cell level. Nat Commun 14, 5011. doi: 10.1038/s41467-023-40584-4 | Abstract | Reprint | Article metrics

Poos AM, Prokoph N, Przybilla MJ, Mallm J-P, Steiger S, Seufert I, John L, Tirier SM, Bauer K, Baumann A, Munawar U, Rasche L, Kortuem M, Giesen N, Huhn S, Reichert P, Mueller-Tidow C, Goldschmidt H, Stegle O, Raab MS, Rippe K*, Weinhold N* (2023) Resolving therapy resistance mechanisms in multiple myeloma by multi-omics subclone analysis. Blood, published online 30 June 2023. *corresponding authors. doi: 10.1182/blood.2023019758 | Abstract | Reprint | Article metrics

Sant P, Rippe K, Mallm JP (2023) Approaches for single-cell RNA sequencing across tissues and cell types. Transcription, published online 16 April 2023. doi: 10.1080/21541264.2023.2200721 | Abstract | Reprint | Article metrics

Kotsiliti E, Leone V, Schuehle S, Govaere O, Li H, Wolf MJ, Horvatic H, Bierwirth S, Hundertmark J, Inverso D, Zizmare L, Sarusi-Portuguez A, Gupta R, O'Connor T, Giannou AD, Shiri AM, Schlesinger Y, Beccaria MG, Rennert C, Pfister D, Ollinger R, Gadjalova I, Ramadori P, Rahbari M, Rahbari N, Healy M, Fernandez-Vaquero M, Yahoo N, Janzen J, Singh I, Fan C, Liu X, Rau M, Feuchtenberger M, Schwaneck E, Wallace SJ, Cockell S, Wilson-Kanamori J, Ramachandran P, Kho C, Kendall TJ, Leblond AL, Keppler SJ, Bielecki P, Steiger K, Hofmann M, Rippe K, Zitzlesberger H, Weber A, Malek N, Ludde T, Vucur M, Augustin HG, Flavell R, Parnas O, Rad R, Pabst O, Henderson NC, Huber S, Macpherson A, Knolle P, Claasen M, Geier A, Trautwein C, Unger K, Elinav E, Waisman A, Abdullah Z, Haller D, Tacke F, Anstee QM, Heikenwalder M (2023) Intestinal B-cells license metabolic T-cell activation in NASH microbiota/antigen-independently and contribute to fibrosis by IgA-FcR signalling. J Hepatol 79, 296-313. doi: 10.1016/j.jhep.2023.04.037 | Abstract | Reprint | Article metrics

Friedrich MJ, Neri P, Kehl N, Michel J, Steiger S, Kilian M, Leblay N, Maity R, Sankowski R, Lee H, Barakat E, Ahn S, Weinhold N, Rippe K, Bunse L, Platten M, Müller-Tidow C, Goldschmidt H, Raab MS, Bahlis NJ (2023) The preexisting T Cell landscape determines response to T cell-engagers therapy. Cancer Cell 41, 711-725 e6. doi: 10.1016/j.ccell.2023.02.008 | Abstract | Reprint | Article metrics

Muckenhuber M, Seufert I, Müller-Ott K, Mallm JP, Klett LC, Knotz C, Hechler J, Kepper N, Erdel F, Rippe K (2023) Epigenetic signals that direct cell type specific interferon beta response in mouse cells. Life Sci Alliance 6, e202201823. doi: 10.26508/lsa.202201823 | Abstract | Reprint | Article metrics

Rademacher A, Weinmann R, Erdel F, Rippe K (2023) Assessing the phase separation propensity of proteins in living cells through optodroplet formation. Meth Mol Biol 2563, 395-411. In Phase-Separated Biomolecular Condensates, eds. Zhou HX, Spille JH, Banerjee P. Humana New York, NY. doi: 10.1007/978-1-0716-2663-4_20 | Abstract | Reprint | Article metrics

ASH 2022 Abstracts

Steiger S, Lutz R, Prokoph N, Palit S, Tirier SM, Reichert P, Baumann A, Hefner N, Schumacher S, Vonficht D, Grünschläger F, Poos AM, John L, Haghverdi L, Mallm J-P, Mai EK, Friedrich M, Kriegsmann K, Awwad MHS, Jauch A, Bertsch U, Tichy D, Müller-Tidow C, Schroers R, Salwender H, Besemer B, Fenk R, Weisel KC, Goldschmidt H, Huhn S, Hundemer M, Rippe K, Haas S, Weinhold N, Raab MS (2022) Bone marrow immune signatures in multiple myeloma are linked to tumor heterogeneity and treatment outcome (ASH 2022 Abstract). Blood 140 (Supplement 1), 2083-2085. doi: 10.1182/blood-2022-168685 | Abstract | Reprint

Friedrich M, Kehl N, Steiger S, Wagner TR, Lindner K, Kilian M, Michel J, Uhrig S, Lutz R, Prokoph N, Poos AM, John L, Sester LS, Weinhold N, Fröhling S, Green EW, Bunse L, Neri P, Bahlis NJ, Rippe K, Eichmüller S, Müller-Tidow C, Goldschmidt H, Platten M, Raab MS (2022) Discovery of Tumor Reactive T Cell Receptors in Newly Diagnosed Multiple Myeloma (ASH 2022 Abstract). Blood 140 (Supplement 1), 604-605. doi: 10.1182/blood-2022-169721 | Abstract | Reprint

Selected recent publications 2019-2022 (more selected publications)

Trojanowski J, Frank L, Rademacher A, Mücke N, Grigaitis P, Rippe K (2022) Transcription activation is enhanced by multivalent interactions independent of phase separation. Mol Cell 82, 1878-1893. doi: 10.1016/j.molcel.2022.04.017 | Abstract | Reprint | Article metrics

Frank L, Rademacher A, Mücke N, Tirier SM, Koeleman E, Knotz C, Schumacher S, Stainczyk SA, Westermann F, Fröhling S, Chudasama P, Rippe K (2022) ALT-FISH quantifies alternative lengthening of telomeres activity by imaging of single-stranded repeats. Nucleic Acids Res 50, e61. doi: 10.1093/nar/gkac113 | Abstract | Reprint | Article metrics

Tirier SM, Mallm J-P, Steiger S, Poos AM, Awwad M, Giesen N, Casiraghi N, Susak H, Bauer K, Baumann A, John L, Seckinger A, Hose D, Müller-Tidow C, Goldschmidt H, Stegle O, Hundemer M, Weinhold N, Raab MS, Rippe K (2021) Subclone specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single cell transcriptomics. Nat Commun 12, 6960. doi: 10.1038/s41467-021-26951-z | Abstract | Reprint | Article metrics

Erdel F, Rademacher A, Vlijm R, Tünnermann J, Schweigert E, Frank L, Yserantant K, Hummert J, Bauer C, Schumacher S, Weinmann R, Alwash AA, Normand C, Herten D-P, Engelhardt J, Rippe K (2020) Mouse heterochromatin adopts digital compaction states without showing hallmarks of HP1-driven liquid-liquid phase separation. Mol Cell 78, 236-249.e7. doi: 10.1016/j.molcel.2020.02.005 | Abstract | Reprint | Article metrics | Comment

Mallm JP, Windisch P, Biran A, Schumacher S, Glass R, Herold-Mende C, Meshorer E, Barbus M, Rippe K (2020) Glioblastoma initiating cells are sensitive to histone demethylase inhibition due to loss of DNA repair capacity. Intl J Cancer 146, 1281-1292. doi: 10.1002/ijc.32649 | Abstract | Reprint | Article metrics

Mallm JP, Iskar M, Ishaque N, Klett LC, Kugler SJ, Muino JM, Teif VB, Poos AM, Großmann S, Erdel F, Tavernari D, Koser SD, Schumacher S, Brors B, König R, Remondini D, Vingron M, Stilgenbauer S, Lichter P, Zapatka M, Mertens D & Rippe K (2019) Linking aberrant chromatin features in chronic lymphocytic leukemia to deregulated transcription factor networks. Mol Syst Biol 15, e8339. doi: 10.15252/msb.20188339 | Abstract | Reprint | Appendix | Additional data | Article metrics

All publications 1989-2022

All publications Karsten Rippe, h-index 71 (Google Scholar)

Publications and bibliometric data of Karsten Rippe from databases

Yearly citation numbers of Karsten Rippe from 2008 to 2022 from Google Scholar.

Total number citations: 18065

h-index: 71

i10 index: 162